Generating Citations
LightCurveLynx uses the LINCC Frameworks Citation-Compass package to track which packages are used. You can use it to generate a list of all citations found in the code or the citations for blocks of code that were executed during a simulation.
Manually Generating Citations
Let’s consider a basic hsiao model from within the sncosmo package:
[1]:
import numpy as np
from lightcurvelynx.consts import M_SUN_G
from lightcurvelynx.models.agn import AGN
model = AGN(
t0=0.0,
blackhole_mass=1e9 * M_SUN_G,
edd_ratio=0.9,
node_label="AGN",
)
times = np.linspace(0, 200, 201)
wavelengths_aa = np.array([4500, 6000])
fluxes = model.evaluate_sed(times, wavelengths_aa)
/home/docs/checkouts/readthedocs.org/user_builds/lightcurvelynx/envs/stable/lib/python3.12/site-packages/tqdm/auto.py:21: TqdmWarning: IProgress not found. Please update jupyter and ipywidgets. See https://ipywidgets.readthedocs.io/en/stable/user_install.html
from .autonotebook import tqdm as notebook_tqdm
---------------------------------------------------------------------------
ValueError Traceback (most recent call last)
Cell In[1], line 6
2
3 from lightcurvelynx.consts import M_SUN_G
4 from lightcurvelynx.models.agn import AGN
5
----> 6 model = AGN(
7 t0=0.0,
8 blackhole_mass=1e9 * M_SUN_G,
9 edd_ratio=0.9,
File ~/checkouts/readthedocs.org/user_builds/lightcurvelynx/envs/stable/lib/python3.12/site-packages/lightcurvelynx/models/agn.py:126, in AGN.__init__(self, t0, blackhole_mass, edd_ratio, inclination_rad, node_label, seed, **kwargs)
123 super().__init__(t0=t0, node_label=node_label, **kwargs)
125 if "redshift" not in kwargs:
--> 126 raise ValueError("'redshift' parameter is required for the AGN model.")
128 if "cosmology" not in kwargs and "distance" not in kwargs:
129 raise ValueError(
130 "At least one of 'cosmology' (str or astropy.cosmology object) or 'distance' (in pc) "
131 "parameters must be provided."
132 )
ValueError: 'redshift' parameter is required for the AGN model.
Now that we have run the simulation, we can print out a list of all the citations during execution using print_used_citations:
[2]:
import citation_compass as cc
cc.print_used_citations()
In this case we return the relevant citation to sncosmo. If we want to be more thorough, we can look at all the citations included in imported libraries, by using print_all_citations:
[3]:
cc.print_all_citations()
lightcurvelynx.astro_utils.passbands.PassbandGroup._lsst_load_preset:
LSST Filters: https://github.com/lsst/throughputs
lightcurvelynx.astro_utils.passbands.PassbandGroup._roman_load_preset:
Roman Filters: https://github.com/RomanSpaceTelescope/roman-technical-information
lightcurvelynx.astro_utils.passbands.PassbandGroup.from_svo:
This research has made use of the SVO Filter Profile Service "Carlos Rodrigo",
funded by MCIN/AEI/10.13039/501100011033/ through grant PID2023-146210NB-I00
* Rodrigo, C., Cruz, P., Aguilar, J.F., et al. 2024; https://ui.adsabs.harvard.edu/abs/2024A%26A...689A..93R/abstract
* Rodrigo, C., Solano, E., Bayo, A., 2012; https://ui.adsabs.harvard.edu/abs/2012ivoa.rept.1015R/abstract
* Rodrigo, C., Solano, E., 2020; https://ui.adsabs.harvard.edu/abs/2020sea..confE.182R/abstract
lightcurvelynx.astro_utils.passbands.Passband.from_sncosmo:
snocosmo.Bandpass:
https://sncosmo.readthedocs.io/en/stable/api/sncosmo.Bandpass.html
lightcurvelynx.astro_utils.passbands.Passband.from_svo:
.. [1] Rodrigo, C., Cruz, P., Aguilar, J.F., et al. 2024;
https://ui.adsabs.harvard.edu/abs/2024A%26A...689A..93R/abstract
.. [2] Rodrigo, C., Solano, E., Bayo, A., 2012;
https://ui.adsabs.harvard.edu/abs/2012ivoa.rept.1015R/abstract
.. [3] Rodrigo, C., Solano, E., 2020; https://ui.adsabs.harvard.edu/abs/2020sea..confE.182R/abstract
lightcurvelynx.models.agn.AGN.compute_sed_standard_disk:
Lipunova, G., Malanchev, K., Shakura, N. (2018)
https://doi.org/10.1007/978-3-319-93009-1_1
All inputs are in CGS.
lightcurvelynx.models.agn.AGN.compute_mag_i:
Shen et al., 2013 - https://adsabs.harvard.edu/full/2013BASI...41...61S
lightcurvelynx.models.agn.AGN.compute_r_0:
Lipunova, G., Malanchev, K., Shakura, N. (2018)
https://doi.org/10.1007/978-3-319-93009-1_1
lightcurvelynx.models.agn.AGN.compute_structure_function_at_inf:
Suberlak et al. 2021 - DOI 10.3847/1538-4357/abc698
lightcurvelynx.models.agn.AGN.compute_sf_inf_4000aa:
Suberlak et al. 2021 - DOI 10.3847/1538-4357/abc698
lightcurvelynx.models.agn.AGN.compute_tau_4000aa:
Suberlak et al. 2021 - DOI 10.3847/1538-4357/abc698
lightcurvelynx.models.agn.AGN.compute_tau:
Suberlak et al. 2021 - DOI 10.3847/1538-4357/abc698
lightcurvelynx.models.agn.AGN.compute_temp_at_r_0:
Lipunova, G., Malanchev, K., Shakura, N. (2018)
https://doi.org/10.1007/978-3-319-93009-1_1
We now pick up the passband functions even though they are not used in the above code snippet. Note that both these print calls will only return functions that have been explicitly annotated and thus the list is not guaranteed to be complete.
Listing Libraries
You can also return a list of imported libraries using get_all_imports:
[4]:
cc.get_all_imports()
[4]:
['encodings.aliases',
'encodings',
'encodings.utf_8',
'encodings.utf_8_sig',
'_virtualenv',
'_distutils_hack',
'types',
'warnings',
'importlib',
'importlib._abc',
'sphinxcontrib',
'operator',
'keyword',
'reprlib',
'collections',
'functools',
'enum',
're._constants',
're._parser',
're._casefix',
're._compiler',
'copyreg',
're',
'fnmatch',
'urllib',
'math',
'ipaddress',
'urllib.parse',
'pathlib',
'ipykernel._version',
'__future__',
'_json',
'json.scanner',
'json.decoder',
'json.encoder',
'json',
'locale',
'signal',
'_weakrefset',
'threading',
'contextlib',
'fcntl',
'_posixsubprocess',
'select',
'collections.abc',
'selectors',
'subprocess',
'typing.io',
'typing.re',
'typing',
'jupyter_client._version',
'platform',
'zmq.backend.select',
'cython_runtime',
'ast',
'_opcode',
'opcode',
'dis',
'token',
'tokenize',
'linecache',
'weakref',
'inspect',
'_cython_3_1_3limited_fastcallnofinalize',
'zmq.constants',
'zmq.error',
'zmq.backend.cython._zmq',
'zmq.backend.cython',
'zmq.backend',
'zmq._typing',
'zmq.utils',
'zmq.utils.interop',
'zmq.sugar.attrsettr',
'_struct',
'struct',
'_compat_pickle',
'_pickle',
'pickle',
'_bisect',
'bisect',
'_random',
'_sha2',
'random',
'zmq.utils.jsonapi',
'zmq.sugar.poll',
'zmq.sugar.socket',
'zmq.sugar.context',
'zmq.sugar.frame',
'zmq.sugar.tracker',
'zmq.sugar.version',
'zmq.sugar.stopwatch',
'zmq.sugar',
'zmq',
'concurrent',
'textwrap',
'traceback',
'string',
'logging',
'concurrent.futures._base',
'concurrent.futures',
'_heapq',
'heapq',
'_socket',
'array',
'socket',
'_ssl',
'binascii',
'base64',
'ssl',
'asyncio.constants',
'asyncio.coroutines',
'_contextvars',
'contextvars',
'asyncio.format_helpers',
'asyncio.base_futures',
'asyncio.exceptions',
'asyncio.base_tasks',
'_asyncio',
'asyncio.events',
'asyncio.futures',
'asyncio.protocols',
'asyncio.transports',
'asyncio.log',
'asyncio.sslproto',
'asyncio.mixins',
'asyncio.locks',
'asyncio.timeouts',
'asyncio.tasks',
'asyncio.staggered',
'asyncio.trsock',
'asyncio.base_events',
'asyncio.runners',
'asyncio.queues',
'asyncio.streams',
'asyncio.subprocess',
'asyncio.taskgroups',
'asyncio.threads',
'asyncio.base_subprocess',
'asyncio.selector_events',
'asyncio.unix_events',
'asyncio',
'zmq._future',
'zmq.asyncio',
'numbers',
'traitlets.utils',
'traitlets.utils.bunch',
'traitlets.utils.descriptions',
'traitlets.utils.getargspec',
'traitlets.utils.importstring',
'traitlets.utils.sentinel',
'traitlets.utils.warnings',
'traitlets.traitlets',
'traitlets._version',
'copy',
'traitlets.utils.decorators',
'traitlets',
'_queue',
'queue',
'jupyter_core.version',
'jupyter_core',
'jupyter_core.utils',
'jupyter_client.channelsabc',
'_hashlib',
'_blake2',
'hashlib',
'hmac',
'dataclasses',
'pprint',
'_datetime',
'datetime',
'tornado',
'logging.handlers',
'html.entities',
'html',
'zlib',
'tornado.speedups',
'tornado.util',
'tornado.escape',
'_curses',
'curses',
'tornado.log',
'tornado.concurrent',
'tornado.ioloop',
'socketserver',
'logging.config',
'traitlets.utils.text',
'gettext',
'argparse',
'traitlets.config.loader',
'traitlets.config.configurable',
'traitlets.utils.nested_update',
'traitlets.config.application',
'traitlets.config',
'traitlets.log',
'zmq.eventloop',
'zmq.eventloop.zmqstream',
'jupyter_client.adapter',
'dateutil._version',
'dateutil',
'calendar',
'six',
'_decimal',
'decimal',
'dateutil._common',
'dateutil.relativedelta',
'six.moves',
'dateutil.tz._common',
'dateutil.tz._factories',
'dateutil.tz.tz',
'dateutil.tz',
'dateutil.parser._parser',
'dateutil.parser.isoparser',
'dateutil.parser',
'_strptime',
'jupyter_client.jsonutil',
'jupyter_client.session',
'jupyter_client.channels',
'termios',
'getpass',
'jupyter_client.clientabc',
'glob',
'_compression',
'_bz2',
'bz2',
'_lzma',
'lzma',
'shutil',
'tempfile',
'platformdirs.api',
'platformdirs.version',
'configparser',
'platformdirs._xdg',
'platformdirs.unix',
'platformdirs',
'jupyter_core.paths',
'jupyter_client.localinterfaces',
'jupyter_client.utils',
'jupyter_client.connect',
'jupyter_client.client',
'jupyter_client.asynchronous.client',
'jupyter_client.asynchronous',
'jupyter_client.blocking.client',
'jupyter_client.blocking',
'jupyter_client.launcher',
'_uuid',
'uuid',
'_csv',
'csv',
'email',
'zipfile._path.glob',
'zipfile._path',
'zipfile',
'quopri',
'email._parseaddr',
'email.base64mime',
'email.quoprimime',
'email.errors',
'email.encoders',
'email.charset',
'email.utils',
'email.header',
'email._policybase',
'email._encoded_words',
'email.iterators',
'email.message',
'importlib.metadata._functools',
'importlib.metadata._text',
'importlib.metadata._adapters',
'importlib.metadata._meta',
'importlib.metadata._collections',
'importlib.metadata._itertools',
'importlib.resources.abc',
'importlib.resources._adapters',
'importlib.resources._common',
'importlib.resources._legacy',
'importlib.resources',
'importlib.abc',
'importlib.metadata',
'jupyter_client.provisioning.provisioner_base',
'jupyter_client.provisioning.factory',
'jupyter_client.provisioning.local_provisioner',
'jupyter_client.provisioning',
'jupyter_client.kernelspec',
'jupyter_client.managerabc',
'jupyter_client.manager',
'jupyter_client.multikernelmanager',
'jupyter_client',
'ipykernel.connect',
'ipykernel',
'IPython.core',
'IPython.core.getipython',
'IPython.core.release',
'executing._utils',
'executing._exceptions',
'executing._position_node_finder',
'executing.executing',
'executing._pytest_utils',
'executing.version',
'executing',
'asttokens.line_numbers',
'astroid.typing',
'astroid.exceptions',
'astroid.util',
'astroid.context',
'astroid.decorators',
'astroid.const',
'astroid.interpreter',
'sysconfig',
'astroid.interpreter._import',
'astroid.interpreter._import.util',
'astroid.interpreter._import.spec',
'_sysconfigdata__linux_x86_64-linux-gnu',
'astroid.modutils',
'astroid.raw_building',
'astroid._ast',
'astroid.nodes.utils',
'astroid.rebuilder',
'astroid.builder',
'astroid.transforms',
'astroid.manager',
'astroid.interpreter.objectmodel',
'astroid.bases',
'astroid.protocols',
'astroid.interpreter.dunder_lookup',
'astroid.nodes.as_string',
'astroid.nodes.const',
'astroid.nodes.node_ng',
'astroid.nodes._base_nodes',
'astroid.filter_statements',
'astroid.nodes.scoped_nodes.utils',
'astroid.nodes.scoped_nodes.mixin',
'astroid.nodes.scoped_nodes.scoped_nodes',
'astroid.nodes.scoped_nodes',
'astroid.nodes.node_classes',
'astroid.nodes',
'astroid.__pkginfo__',
'astroid.brain',
'astroid.brain.helpers',
'astroid.inference_tip',
'astroid.objects',
'astroid.arguments',
'astroid.brain.brain_argparse',
'astroid.brain.brain_attrs',
'astroid.brain.brain_boto3',
'astroid.helpers',
'astroid.brain.brain_builtin_inference',
'astroid.brain.brain_collections',
'astroid.brain.brain_crypt',
'astroid.brain.brain_ctypes',
'astroid.brain.brain_curses',
'astroid.brain.brain_dataclasses',
'astroid.brain.brain_datetime',
'astroid.brain.brain_dateutil',
'astroid.brain.brain_functools',
'astroid.brain.brain_gi',
'astroid.brain.brain_hashlib',
'astroid.brain.brain_http',
'astroid.brain.brain_hypothesis',
'astroid.brain.brain_io',
'astroid.brain.brain_mechanize',
'astroid.brain.brain_multiprocessing',
'astroid.brain.brain_namedtuple_enum',
'astroid.brain.brain_numpy_core_einsumfunc',
'astroid.brain.brain_numpy_core_fromnumeric',
'astroid.brain.brain_numpy_utils',
'astroid.brain.brain_numpy_core_function_base',
'astroid.brain.brain_numpy_core_multiarray',
'astroid.brain.brain_numpy_core_numeric',
'astroid.brain.brain_numpy_core_numerictypes',
'astroid.brain.brain_numpy_core_umath',
'astroid.brain.brain_numpy_ma',
'astroid.brain.brain_numpy_ndarray',
'astroid.brain.brain_numpy_random_mtrand',
'astroid.brain.brain_pathlib',
'astroid.brain.brain_pkg_resources',
'astroid.brain.brain_pytest',
'astroid.brain.brain_qt',
'astroid.brain.brain_random',
'astroid.brain.brain_re',
'astroid.brain.brain_regex',
'astroid.brain.brain_responses',
'astroid.brain.brain_scipy_signal',
'astroid.brain.brain_signal',
'astroid.brain.brain_six',
'astroid.brain.brain_sqlalchemy',
'astroid.brain.brain_ssl',
'astroid.brain.brain_statistics',
'astroid.brain.brain_subprocess',
'astroid.brain.brain_threading',
'astroid.brain.brain_type',
'astroid.brain.brain_typing',
'astroid.brain.brain_unittest',
'astroid.brain.brain_uuid',
'astroid.astroid_manager',
'astroid',
'asttokens.util',
'asttokens.asttokens',
'asttokens',
'fractions',
'pure_eval.utils',
'pure_eval.my_getattr_static',
'pure_eval.core',
'pure_eval.version',
'pure_eval',
'stack_data.utils',
'stack_data.core',
'stack_data.formatting',
'stack_data.serializing',
'stack_data.version',
'stack_data',
'pygments',
'pygments.formatters._mapping',
'pygments.plugin',
'pygments.util',
'pygments.formatters',
'pygments.styles._mapping',
'pygments.styles',
'pygments.formatter',
'pygments.console',
'pygments.token',
'pygments.style',
'pygments.formatters.terminal256',
'IPython.utils',
'shlex',
'IPython.utils.encoding',
'IPython.utils.py3compat',
'IPython.utils._process_common',
'IPython.utils._process_posix',
'IPython.utils.process',
'IPython.utils.path',
'pygments.styles.monokai',
'pygments.styles.default',
'pygments.styles.pastie',
'pygments.styles.gruvbox',
'IPython.utils.PyColorize',
'IPython.utils.terminal',
'IPython.core.display_trap',
'pkgutil',
'pydoc',
'codeop',
'IPython.core.debugger_backport',
'cmd',
'bdb',
'code',
'pdb',
'IPython.core.debugger',
'IPython.core.tbtools',
'IPython.core.doctb',
'IPython.core.ultratb',
'IPython.utils._sysinfo',
'IPython.utils.sysinfo',
'IPython.core.crashhandler',
'IPython.utils.importstring',
'IPython.paths',
'IPython.core.profiledir',
'IPython.core.application',
'IPython.terminal',
'IPython.core.compilerop',
'IPython.core.error',
'IPython.utils.docs',
'IPython.utils.decorators',
'IPython.utils.text',
'IPython.core.magic_arguments',
'getopt',
'IPython.core.display_functions',
'mimetypes',
'IPython.testing',
'IPython.testing.skipdoctest',
'IPython.core.display',
'IPython.lib',
'IPython.lib.display',
'IPython.display',
'IPython.utils.data',
'IPython.core.page',
'IPython.lib.pretty',
'IPython.utils.openpy',
'IPython.utils.dir2',
'IPython.utils.wildcard',
'pygments.lexers._mapping',
'pygments.modeline',
'pygments.lexers',
'pygments.filter',
'pygments.filters',
'pygments.regexopt',
'pygments.lexer',
'pygments.unistring',
'pygments.lexers.python',
'pygments.formatters.html',
'IPython.core.oinspect',
'IPython.utils.tokenutil',
'IPython.core.inputtransformer2',
'IPython.utils.ipstruct',
'IPython.core.magic',
'IPython.external',
'IPython.external.pickleshare',
'IPython.core.hooks',
'IPython.core.autocall',
'IPython.core.macro',
'IPython.core.splitinput',
'IPython.core.prefilter',
'IPython.core.alias',
'IPython.core.builtin_trap',
'decorator',
'_sqlite3',
'sqlite3.dbapi2',
'sqlite3',
'IPython.core.history',
'IPython.core.displayhook',
'IPython.core.displaypub',
'IPython.core.events',
'IPython.core.extensions',
'IPython.utils.sentinel',
'IPython.core.formatters',
'IPython.core.logger',
'IPython.core.payload',
'IPython.core.tips',
'IPython.core.usage',
'IPython.utils.capture',
'IPython.utils.io',
'IPython.utils.strdispatch',
'IPython.utils.syspathcontext',
'IPython.core.async_helpers',
'IPython.core.interactiveshell',
'IPython.core.kitty',
'prompt_toolkit.application.current',
'prompt_toolkit.eventloop.utils',
'prompt_toolkit.eventloop.async_generator',
'prompt_toolkit.eventloop.inputhook',
'prompt_toolkit.eventloop',
'prompt_toolkit.application.run_in_terminal',
'prompt_toolkit.selection',
'prompt_toolkit.clipboard.base',
'prompt_toolkit.clipboard.in_memory',
'prompt_toolkit.clipboard',
'prompt_toolkit.cache',
'prompt_toolkit.enums',
'prompt_toolkit.filters.base',
'prompt_toolkit.filters.app',
'prompt_toolkit.filters.cli',
'prompt_toolkit.filters.utils',
'prompt_toolkit.filters',
'prompt_toolkit.document',
'prompt_toolkit.auto_suggest',
'prompt_toolkit.keys',
'prompt_toolkit.key_binding.key_bindings',
'wcwidth.bisearch',
'wcwidth.table_mc',
'wcwidth.table_wide',
'wcwidth.table_zero',
'wcwidth.table_grapheme',
'wcwidth.table_ambiguous',
'wcwidth.unicode_versions',
'wcwidth._constants',
'wcwidth._wcwidth',
'wcwidth.table_vs16',
'wcwidth._wcswidth',
'wcwidth.text_sizing',
'wcwidth.control_codes',
'wcwidth.sgr_state',
'wcwidth.escape_sequences',
'wcwidth._width',
'wcwidth.grapheme',
'wcwidth.hyperlink',
'wcwidth._clip',
'wcwidth.align',
'secrets',
'wcwidth.textwrap',
'wcwidth.wcwidth',
'wcwidth',
'prompt_toolkit.utils',
'prompt_toolkit.key_binding.key_processor',
'prompt_toolkit.key_binding',
'prompt_toolkit.key_binding.vi_state',
'prompt_toolkit.cursor_shapes',
'prompt_toolkit.data_structures',
'prompt_toolkit.styles.base',
'prompt_toolkit.styles.named_colors',
'prompt_toolkit.styles.style',
'prompt_toolkit.styles.defaults',
'prompt_toolkit.styles.pygments',
'colorsys',
'prompt_toolkit.styles.style_transformation',
'prompt_toolkit.styles',
'prompt_toolkit.output.color_depth',
'prompt_toolkit.output.base',
'prompt_toolkit.output.flush_stdout',
'prompt_toolkit.output.plain_text',
'prompt_toolkit.output.defaults',
'prompt_toolkit.output',
'prompt_toolkit.output.vt100',
'prompt_toolkit.mouse_events',
'prompt_toolkit.formatted_text.base',
'prompt_toolkit.formatted_text.ansi',
'xml',
'xml.dom.domreg',
'xml.dom',
'xml.dom.minicompat',
'xml.dom.NodeFilter',
'xml.dom.xmlbuilder',
'xml.dom.minidom',
'prompt_toolkit.formatted_text.html',
'prompt_toolkit.formatted_text.pygments',
'prompt_toolkit.formatted_text.utils',
'prompt_toolkit.formatted_text',
'prompt_toolkit.completion.base',
'prompt_toolkit.completion.deduplicate',
'prompt_toolkit.completion.filesystem',
'prompt_toolkit.completion.word_completer',
'prompt_toolkit.completion.fuzzy_completer',
'prompt_toolkit.completion.nested',
'prompt_toolkit.completion',
'prompt_toolkit.history',
'prompt_toolkit.search',
'prompt_toolkit.validation',
'prompt_toolkit.buffer',
'prompt_toolkit.input.base',
'prompt_toolkit.input.defaults',
'prompt_toolkit.input',
'prompt_toolkit.input.typeahead',
'prompt_toolkit.key_binding.bindings',
'prompt_toolkit.key_binding.bindings.scroll',
'prompt_toolkit.key_binding.bindings.page_navigation',
'prompt_toolkit.lexers.base',
'prompt_toolkit.lexers.pygments',
'prompt_toolkit.lexers',
'prompt_toolkit.layout.utils',
'prompt_toolkit.layout.processors',
'prompt_toolkit.layout.controls',
'prompt_toolkit.layout.dimension',
'prompt_toolkit.layout.margins',
'prompt_toolkit.layout.mouse_handlers',
'prompt_toolkit.layout.screen',
'prompt_toolkit.layout.containers',
'prompt_toolkit.layout.layout',
'prompt_toolkit.layout.menus',
'prompt_toolkit.layout.scrollable_pane',
'prompt_toolkit.layout',
'prompt_toolkit.key_binding.bindings.completion',
'prompt_toolkit.key_binding.bindings.named_commands',
'prompt_toolkit.key_binding.bindings.basic',
'prompt_toolkit.key_binding.bindings.cpr',
'prompt_toolkit.key_binding.bindings.emacs',
'prompt_toolkit.key_binding.bindings.mouse',
'prompt_toolkit.input.ansi_escape_sequences',
'prompt_toolkit.input.vt100_parser',
'prompt_toolkit.key_binding.digraphs',
'prompt_toolkit.key_binding.bindings.vi',
'prompt_toolkit.key_binding.defaults',
'prompt_toolkit.key_binding.emacs_state',
'prompt_toolkit.layout.dummy',
'prompt_toolkit.renderer',
'prompt_toolkit.application.application',
'prompt_toolkit.application.dummy',
'prompt_toolkit.application',
'prompt_toolkit.widgets.toolbars',
'prompt_toolkit.widgets.base',
'prompt_toolkit.key_binding.bindings.focus',
'prompt_toolkit.widgets.dialogs',
'prompt_toolkit.widgets.menus',
'prompt_toolkit.widgets',
'prompt_toolkit.shortcuts.choice_input',
'prompt_toolkit.shortcuts.dialogs',
'xml.parsers',
'pyexpat.errors',
'pyexpat.model',
'pyexpat',
'xml.parsers.expat.model',
'xml.parsers.expat.errors',
'xml.parsers.expat',
'xml.dom.expatbuilder',
'prompt_toolkit.shortcuts.progress_bar.formatters',
'prompt_toolkit.shortcuts.progress_bar.base',
'prompt_toolkit.shortcuts.progress_bar',
'prompt_toolkit.key_binding.bindings.auto_suggest',
'prompt_toolkit.key_binding.bindings.open_in_editor',
'prompt_toolkit.shortcuts.prompt',
'prompt_toolkit.shortcuts.utils',
'prompt_toolkit.shortcuts',
'email.feedparser',
'email.parser',
'prompt_toolkit',
'prompt_toolkit.patch_stdout',
'unicodedata',
'IPython.core.guarded_eval',
'IPython.core.latex_symbols',
'IPython.utils.generics',
'parso.utils',
'parso.tree',
'parso.python',
'parso.python.token',
'parso.python.tokenize',
'parso.pgen2.grammar_parser',
'parso.pgen2.generator',
'parso.pgen2',
'parso.parser',
'parso._compatibility',
'difflib',
'parso.python.prefix',
'parso.python.tree',
'parso.python.parser',
'parso.python.diff',
'parso.cache',
'parso.normalizer',
'parso.python.errors',
'parso.python.pep8',
'parso.file_io',
'parso.grammar',
'parso',
'jedi.parser_utils',
'jedi.debug',
'jedi.settings',
'jedi.cache',
'jedi.file_io',
'jedi.inference.cache',
'jedi.inference.helpers',
'jedi.inference.utils',
'jedi.inference.base_value',
'jedi.inference.sys_path',
'jedi.inference.recursion',
'jedi.inference.flow_analysis',
'jedi.common',
'jedi.inference.lazy_value',
'jedi.inference.docstrings',
'jedi.plugins',
'jedi.inference.names',
'jedi.inference.filters',
'jedi.inference.compiled.getattr_static',
'jedi.inference.compiled.access',
'jedi.inference.signature',
'jedi.inference.context',
'jedi.inference.compiled.value',
'jedi.inference.compiled',
'jedi.inference.analysis',
'jedi.inference.gradual',
'jedi.inference.value.module',
'jedi.inference.value.dynamic_arrays',
'jedi.inference.value.iterable',
'jedi.inference.arguments',
'jedi.inference.parser_cache',
'jedi.inference.gradual.generics',
'jedi.inference.value.function',
'jedi.inference.value.decorator',
'jedi.inference.value.klass',
'jedi.inference.value.instance',
'jedi.inference.value',
'jedi.inference.gradual.base',
'jedi.inference.gradual.type_var',
'jedi.inference.gradual.typing',
'jedi.inference.gradual.stub_value',
'jedi.inference.gradual.typeshed',
'jedi._compatibility',
'jedi.inference.compiled.subprocess.functions',
'jedi.api.exceptions',
'jedi.inference.compiled.subprocess',
'jedi.inference.imports',
'jedi.inference.param',
'jedi.inference.gradual.annotation',
'jedi.inference.syntax_tree',
'jedi.inference',
'jedi.inference.gradual.conversion',
'jedi.inference.compiled.mixed',
'pydoc_data',
'pydoc_data.topics',
'jedi.api.keywords',
'jedi.api.completion_cache',
'jedi.api.helpers',
'jedi.api.classes',
'jedi.api.interpreter',
'jedi.api.strings',
'jedi.api.file_name',
'jedi.inference.docstring_utils',
'jedi.api.completion',
'filecmp',
'jedi.api.environment',
'jedi.inference.references',
'jedi.api.project',
'jedi.api.errors',
'jedi.inference.value.namespace',
'jedi.api.refactoring',
'jedi.api.refactoring.extract',
'jedi.inference.gradual.utils',
'jedi.api',
'jedi.plugins.stdlib',
'jedi.plugins.flask',
'jedi.plugins.pytest',
'jedi.plugins.django',
'jedi.plugins.registry',
'jedi',
'IPython.core.completer',
'IPython.terminal.ptutils',
'IPython.terminal.shortcuts.auto_match',
'IPython.terminal.shortcuts.filters',
'IPython.terminal.shortcuts.auto_suggest',
'IPython.terminal.shortcuts',
'concurrent.futures.thread',
'IPython.terminal.debugger',
'IPython.lib.clipboard',
'IPython.terminal.magics',
'IPython.terminal.pt_inputhooks',
'IPython.terminal.prompts',
'IPython.terminal.interactiveshell',
'IPython.core.magics.auto',
'IPython.core.magics.basic',
'http',
'http.client',
'urllib.response',
'urllib.error',
'urllib.request',
'IPython.utils.contexts',
'IPython.core.magics.code',
'IPython.core.magics.config',
'IPython.core.magics.display',
'_lsprof',
'profile',
'cProfile',
'pstats',
'timeit',
'IPython.utils.module_paths',
'resource',
'IPython.utils.timing',
'IPython.core.magics.ast_mod',
'IPython.core.magics.execution',
'IPython.core.magics.extension',
'IPython.core.magics.history',
'IPython.core.magics.logging',
'IPython.core.magics.namespace',
'IPython.core.magics.osm',
'IPython.core.magics.packaging',
'IPython.core.magics.pylab',
'IPython.core.magics.script',
'IPython.core.magics',
'IPython.core.shellapp',
'IPython.extensions',
'IPython.extensions.storemagic',
'IPython.terminal.ipapp',
'IPython.terminal.embed',
'IPython.utils.frame',
'IPython',
'ipykernel.thread',
'ipykernel.control',
'ipykernel.heartbeat',
'ipykernel.iostream',
'comm.base_comm',
'comm',
'ipykernel.jsonutil',
'psutil._common',
'psutil._ntuples',
'psutil._psposix',
'psutil._psutil_linux',
'psutil._pslinux',
'psutil',
'ipykernel.utils',
'ipykernel.kernelbase',
'ipykernel.comm.comm',
'ipykernel.comm.manager',
'ipykernel.comm',
'ipykernel.compiler',
'packaging',
'packaging.version',
'ipykernel.eventloops',
'ipykernel.displayhook',
'ipykernel.zmqshell',
'ipykernel.ipkernel',
'_ctypes',
'ctypes._endian',
'ctypes',
'ipykernel.parentpoller',
'ipykernel.socket_pair',
'ipykernel.subshell',
'ipykernel.subshell_manager',
'ipykernel.shellchannel',
'ipykernel.kernelapp',
'tornado.platform',
'tornado.gen',
'tornado.platform.asyncio',
'tornado.locks',
'tornado.queues',
'debugpy._version',
'debugpy.public_api',
'debugpy',
'debugpy._vendored._util',
'debugpy._vendored',
'_pydevd_bundle',
'encodings.ascii',
'encodings.latin_1',
'stringprep',
'encodings.idna',
'_pydevd_bundle.pydevd_vm_type',
'_pydev_bundle',
'xmlrpc',
'gzip',
'xmlrpc.client',
'http.server',
'xmlrpc.server',
'_pydev_bundle._pydev_saved_modules',
'_pydevd_bundle.pydevd_constants',
'_pydev_runfiles',
'_pydevd_frame_eval',
'pydev_ipython',
'pydevd_plugins',
'_pydev_bundle.pydev_log',
'_pydev_bundle._pydev_filesystem_encoding',
'_pydevd_bundle.pydevd_comm_constants',
'pydevd_file_utils',
'_pydevd_bundle.pydevd_dont_trace_files',
'_pydev_bundle._pydev_execfile',
'_pydevd_bundle.pydevd_exec2',
'_pydev_bundle.pydev_imports',
'_pydev_bundle.pydev_is_thread_alive',
'_pydev_bundle.pydev_override',
'pydevd_plugins.extensions',
'_pydevd_bundle.pydevd_extension_utils',
'_pydevd_bundle.pydevd_frame_utils',
'_pydevd_bundle.pydevd_filtering',
'_pydevd_bundle.pydevd_io',
'_pydevd_bundle.pydevd_defaults',
'_pydevd_bundle.pydevd_utils',
'_pydevd_bundle.pydevd_runpy',
'_pydev_bundle._pydev_tipper_common',
'_pydev_bundle._pydev_imports_tipper',
'_pydev_bundle._pydev_calltip_util',
'_pydevd_bundle.pydevd_safe_repr',
'_pydevd_bundle.pydevd_resolver',
'_pydevd_bundle.pydevd_extension_api',
'_pydevd_bundle.pydevd_xml',
'_cython_3_2_4',
'_pydevd_bundle.pydevd_dont_trace',
'_pydevd_frame_eval.vendored',
'_pydevd_frame_eval.vendored.bytecode.flags',
'_pydevd_frame_eval.vendored.bytecode.instr',
'_pydevd_frame_eval.vendored.bytecode.bytecode',
'_pydevd_frame_eval.vendored.bytecode.concrete',
'_pydevd_frame_eval.vendored.bytecode.cfg',
'_pydevd_frame_eval.vendored.bytecode',
'_pydevd_bundle.pydevd_bytecode_utils',
'_pydevd_bundle.pydevd_cython',
'_pydevd_bundle.pydevd_cython_wrapper',
'_pydevd_bundle.pydevd_additional_thread_info',
'_pydevd_sys_monitoring',
'_pydevd_sys_monitoring_cython',
'_pydevd_bundle.pydevd_additional_thread_info_regular',
'_pydevd_bundle.pydevd_trace_dispatch',
'_pydevd_bundle.pydevd_import_class',
'_pydevd_bundle.pydevd_breakpoints',
'_pydevd_sys_monitoring._pydevd_sys_monitoring_cython',
'_pydevd_sys_monitoring.pydevd_sys_monitoring',
'_pydevd_bundle.pydevd_thread_lifecycle',
'_pydevd_bundle.pydevd_save_locals',
'_pydev_bundle.pydev_monkey',
'pydevd_tracing',
'_pydevd_bundle.pydevd_collect_bytecode_info',
'_pydevd_bundle.pydevd_daemon_thread',
'_pydevd_bundle.pydevd_timeout',
'_pydevd_bundle.pydevd_vars',
'_pydev_bundle.pydev_console_utils',
'_pydevd_bundle.pydevd_custom_frames',
'_pydevd_bundle.pydevd_net_command',
'_pydevd_bundle.pydevconsole_code',
'_pydev_bundle.pydev_umd',
'pydevconsole',
'_pydev_bundle._pydev_completer',
'_pydevd_bundle.pydevd_net_command_factory_xml',
'_pydevd_frame_eval.pydevd_frame_eval_main',
'_pydevd_bundle.pydevd_source_mapping',
'_pydevd_bundle.pydevd_concurrency_analyser',
'_pydevd_bundle.pydevd_concurrency_analyser.pydevd_thread_wrappers',
'_pydevd_bundle.pydevd_concurrency_analyser.pydevd_concurrency_logger',
'_pydevd_bundle._debug_adapter',
'_pydevd_bundle._debug_adapter.pydevd_schema_log',
'_pydevd_bundle._debug_adapter.pydevd_base_schema',
'_pydevd_bundle._debug_adapter.pydevd_schema',
'_pydevd_bundle.pydevd_reload',
'_pydev_bundle.fsnotify',
'_pydevd_bundle.pydevd_console',
'_pydevd_bundle.pydevd_comm',
'_pydevd_bundle.pydevd_net_command_factory_json',
'_pydevd_bundle.pydevd_api',
'_pydevd_bundle.pydevd_json_debug_options',
'_pydevd_bundle.pydevd_process_net_command_json',
'_pydevd_bundle.pydevd_traceproperty',
'_pydevd_bundle.pydevd_process_net_command',
'_pydevd_bundle.pydevd_suspended_frames',
'pydevd_plugins.pydevd_line_validation',
'pydevd_plugins.django_debug',
'pydevd_plugins.jinja2_debug',
'_pydevd_bundle.pydevd_plugin_utils',
'pydevd_plugins.extensions.types',
'pydevd_plugins.extensions.types.pydevd_helpers',
'pydevd_plugins.extensions.types.pydevd_plugin_numpy_types',
'pydevd_plugins.extensions.types.pydevd_plugin_pandas_types',
'pydevd_plugins.extensions.types.pydevd_plugins_django_form_str',
'pydevd',
'debugpy._vendored.force_pydevd',
'debugpy.server',
'debugpy.adapter',
'debugpy.common',
'debugpy.common.json',
'debugpy.common.timestamp',
'debugpy.common.util',
'debugpy.common.log',
...]
The list of libraries tends to be pretty long.
Citations in Simulations
For convenience a generate_citations flag is included in the top level simulate_lightcurves function.
Disclaimer
Citation-Compass is still experimental and relies on users to explicitly annotate the functions. LightCurveLynx users should confirm that they are citing all of the relevant papers.